Preprocessing analysis for RNA velocity in the prefrontal coretex#
To reproduce results, the RDS file PFC_sce_quantifications_combined.rds
provided by Sonesen et al. is needed. The scripts and notebooks need to be run in the following order:
rds_to_h5ad.R
adata_generation.ipynb
velocyto_vi.ipynb
Every notebook specific to one preprocessing algorithm and RNA velocity inference approach:
*_vi.ipynb
,*_em_ss.ipynb
correlation_analysis.ipynb