Tutorials

Tutorials#

Getting Started#

  • quickstart - Basic usage of spatialvi-tools

  • data_preparation - Preparing spatial data for analysis

Model-Specific Tutorials#

  • spatial_vae - Using SpatialVAE for dimensionality reduction

  • deconvolution - Cell type deconvolution with DestVI

  • niche_analysis - Niche analysis with scVIVA

  • cell_interactions - Cell-cell interaction inference with AMICI

Advanced Topics#

  • custom_models - Building custom spatial models

  • integration - Integrating with scanpy and squidpy

Contents