# Tutorials

## Getting Started

- {doc}`quickstart` - Basic usage of spatialvi-tools
- {doc}`data_preparation` - Preparing spatial data for analysis

## Model-Specific Tutorials

- {doc}`spatial_vae` - Using SpatialVAE for dimensionality reduction
- {doc}`deconvolution` - Cell type deconvolution with DestVI
- {doc}`niche_analysis` - Niche analysis with scVIVA
- {doc}`cell_interactions` - Cell-cell interaction inference with AMICI

## Advanced Topics

- {doc}`custom_models` - Building custom spatial models
- {doc}`integration` - Integrating with scanpy and squidpy

```{toctree}
:hidden:
:maxdepth: 1

quickstart
data_preparation
spatial_vae
deconvolution
niche_analysis
cell_interactions
custom_models
integration
```