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spatialvi-tools
Installation
Tutorials
API Reference
spatialvi.model.SpatialVAE
spatialvi.model.BaseSpatialModel
spatialvi.external.AMICI
spatialvi.external.VIVS
spatialvi.external.Starfysh
spatialvi.external.Harreman
spatialvi.external.Nolan
spatialvi.external.Lambda
spatialvi.external.PPIInference
spatialvi.external.SPARL
spatialvi.external.scVIVA
spatialvi.external.ResolVI
spatialvi.external.DestVI
spatialvi.module.SpatialVAEModule
spatialvi.module.NicheModule
spatialvi.module.DeconvolutionModule
spatialvi.data.compute_spatial_neighbors
spatialvi.data.compute_niche_composition
spatialvi.data.synthetic_spatial
spatialvi.data.synthetic_scrna
spatialvi.nn.SpatialEncoder
spatialvi.nn.SpatialDecoder
spatialvi.nn.SpatialAttention
spatialvi.nn.NeighborAttention
spatialvi.train.SpatialTrainingPlan
spatialvi.train.NicheTrainingPlan
spatialvi.train.DeconvolutionTrainingPlan
spatialvi.utils.spatial_autocorrelation
spatialvi.utils.plot_spatial
spatialvi.utils.plot_proportions
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