spatialvi.model.SpatialVAE
==========================

.. currentmodule:: spatialvi.model

.. autoclass:: SpatialVAE

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~SpatialVAE.__init__
      ~SpatialVAE.compute_niche_composition
      ~SpatialVAE.compute_spatial_neighbors
      ~SpatialVAE.convert_legacy_save
      ~SpatialVAE.data_registry
      ~SpatialVAE.deregister_manager
      ~SpatialVAE.get_anndata_manager
      ~SpatialVAE.get_from_registry
      ~SpatialVAE.get_latent_representation
      ~SpatialVAE.get_normalized_expression
      ~SpatialVAE.get_setup_arg
      ~SpatialVAE.get_spatial_coordinates
      ~SpatialVAE.get_spatial_neighbors
      ~SpatialVAE.get_spatial_representation
      ~SpatialVAE.get_state_registry
      ~SpatialVAE.get_var_names
      ~SpatialVAE.load
      ~SpatialVAE.load_registry
      ~SpatialVAE.register_manager
      ~SpatialVAE.save
      ~SpatialVAE.setup_anndata
      ~SpatialVAE.to_device
      ~SpatialVAE.train
      ~SpatialVAE.transfer_fields
      ~SpatialVAE.update_setup_method_args
      ~SpatialVAE.view_anndata_setup
      ~SpatialVAE.view_registry
      ~SpatialVAE.view_setup_args
      ~SpatialVAE.view_setup_method_args
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~SpatialVAE.adata
      ~SpatialVAE.adata_manager
      ~SpatialVAE.device
      ~SpatialVAE.get_normalized_function_name
      ~SpatialVAE.history
      ~SpatialVAE.is_trained
      ~SpatialVAE.n_neighbors
      ~SpatialVAE.registry
      ~SpatialVAE.run_id
      ~SpatialVAE.run_name
      ~SpatialVAE.spatial_key
      ~SpatialVAE.summary_string
      ~SpatialVAE.test_indices
      ~SpatialVAE.train_indices
      ~SpatialVAE.validation_indices