spatialvi.model.BaseSpatialModel
================================

.. currentmodule:: spatialvi.model

.. autoclass:: BaseSpatialModel

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~BaseSpatialModel.__init__
      ~BaseSpatialModel.compute_niche_composition
      ~BaseSpatialModel.compute_spatial_neighbors
      ~BaseSpatialModel.convert_legacy_save
      ~BaseSpatialModel.data_registry
      ~BaseSpatialModel.deregister_manager
      ~BaseSpatialModel.get_anndata_manager
      ~BaseSpatialModel.get_from_registry
      ~BaseSpatialModel.get_latent_representation
      ~BaseSpatialModel.get_normalized_expression
      ~BaseSpatialModel.get_setup_arg
      ~BaseSpatialModel.get_state_registry
      ~BaseSpatialModel.get_var_names
      ~BaseSpatialModel.load
      ~BaseSpatialModel.load_registry
      ~BaseSpatialModel.register_manager
      ~BaseSpatialModel.save
      ~BaseSpatialModel.setup_anndata
      ~BaseSpatialModel.to_device
      ~BaseSpatialModel.train
      ~BaseSpatialModel.transfer_fields
      ~BaseSpatialModel.update_setup_method_args
      ~BaseSpatialModel.view_anndata_setup
      ~BaseSpatialModel.view_registry
      ~BaseSpatialModel.view_setup_args
      ~BaseSpatialModel.view_setup_method_args
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~BaseSpatialModel.adata
      ~BaseSpatialModel.adata_manager
      ~BaseSpatialModel.device
      ~BaseSpatialModel.get_normalized_function_name
      ~BaseSpatialModel.history
      ~BaseSpatialModel.is_trained
      ~BaseSpatialModel.n_neighbors
      ~BaseSpatialModel.registry
      ~BaseSpatialModel.run_id
      ~BaseSpatialModel.run_name
      ~BaseSpatialModel.spatial_key
      ~BaseSpatialModel.summary_string
      ~BaseSpatialModel.test_indices
      ~BaseSpatialModel.train_indices
      ~BaseSpatialModel.validation_indices