spatialvi.external.AMICI
========================

.. currentmodule:: spatialvi.external

.. autoclass:: AMICI

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~AMICI.__init__
      ~AMICI.compute_niche_composition
      ~AMICI.compute_spatial_neighbors
      ~AMICI.convert_legacy_save
      ~AMICI.data_registry
      ~AMICI.deregister_manager
      ~AMICI.get_anndata_manager
      ~AMICI.get_cell_type_interactions
      ~AMICI.get_from_registry
      ~AMICI.get_interaction_scores
      ~AMICI.get_latent_representation
      ~AMICI.get_normalized_expression
      ~AMICI.get_setup_arg
      ~AMICI.get_spatial_coordinates
      ~AMICI.get_spatial_neighbors
      ~AMICI.get_state_registry
      ~AMICI.get_var_names
      ~AMICI.load
      ~AMICI.load_registry
      ~AMICI.register_manager
      ~AMICI.save
      ~AMICI.setup_anndata
      ~AMICI.to_device
      ~AMICI.train
      ~AMICI.transfer_fields
      ~AMICI.update_setup_method_args
      ~AMICI.view_anndata_setup
      ~AMICI.view_registry
      ~AMICI.view_setup_args
      ~AMICI.view_setup_method_args
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~AMICI.adata
      ~AMICI.adata_manager
      ~AMICI.device
      ~AMICI.get_normalized_function_name
      ~AMICI.history
      ~AMICI.is_trained
      ~AMICI.n_neighbors
      ~AMICI.registry
      ~AMICI.run_id
      ~AMICI.run_name
      ~AMICI.spatial_key
      ~AMICI.summary_string
      ~AMICI.test_indices
      ~AMICI.train_indices
      ~AMICI.validation_indices