Loads 10x output counts and converts expression to gene symbols
read_10x(expression, genes, barcodes, ensToSymbol = TRUE)path to matrix.mtx
path to genes.tsv
path to barcodes.tsv
bool denoting whether or not to perform label conversion
sparse count matrix with appropriate row/column names
This version takes in three files as inputs:
matrix.mtx
genes.tsv
barcodes.tsv
These files are found in the output of "cellranger count" in a folder that looks like:
outs/filtered_gene_bc_matrices/mm10
though with the name of whichever genome you are using instead of 'mm10'