Init Hotspot object from Vision Object

Init Hotspot object from Vision Object

hsInit(object, model = "normal", tree = F, num_umi = NULL, logdata = FALSE)

Arguments

object

the Vision Object

model

the model for Hotspot (ie "normal", "danb"...)

tree

boolean, whether to use the tree as ls

num_umi

df of barcodes x num_umi

logdata

boolean, log the expression data, avoid for danb

Value

the Hotspot object