Main entry point for running VISION Analysis

Source: R/methods-Vision.R

The main analysis function. Runs the entire VISION analysis pipeline and returns a VISION object populated with the result.

# S4 method for Vision
analyze(object, tree = FALSE, hotspot = FALSE)

Arguments

object

VISION object

tree

whether to use the TREE slot of the object to calculate values

Value

VISION object

Examples

if (FALSE) {

vis <- Vision(data = expMat, signatures = sigs)

options(mc.cores=10) # Use 10 cores
vis <- analyze(vis)

}